0.4.0

What's Changed

• docs: add setup instructions by @korikuzma in #51
• docs: link to reference implementations in toolkit index by @korikuzma in #52
• docs: align section urls with navigation names by @korikuzma in #53
• docs: overhaul by @korikuzma in #54
• fix(docs): remove unused md and update script by @korikuzma in #55
• docs: use consistent pillar names by @korikuzma in #56
• feat(bundles): add normalize and export helpers by @korikuzma in #58
• feat: validate bundle-local json pointers during loading by @korikuzma in #60
• refactor(test): reorg bundle tests by @korikuzma in #61
• feat!: resolve iriReferences targets from producer bundles by @korikuzma in #65
• docs: add public bundle repo to loading by @korikuzma in #66
• feat: add getting started guide by @korikuzma in #67
• feat: cache bundle repository artifacts locally by @korikuzma in #69
• docs: use better nav names by @korikuzma in #70
• docs: another overhaul by @korikuzma in #71
• chore: remove stale files by @korikuzma in #72
• feat!: validate bundle schemas and contents by @korikuzma in #73
• fix: export should support Pydantic models by @korikuzma in #74
• fix: Bundle.resolve() should enforce RFC 6901 pointer rules by @korikuzma in #75
• chore(docs): remove stale compatibility.md by @korikuzma in #76
• fix: preserve empty metadata in bundles by @korikuzma in #77
• fix: do not allow collection or metadata names to be overwritten during serialization by @korikuzma in #78
• fix: restrict pydantic model traversal to declared fields by @korikuzma in #79
• fix(repository): preserve encoded cache names when listed by @korikuzma in #80
• docs: update nb + try to add initial mybinder by @korikuzma in #81
• feat: add mybinder instructions by @korikuzma in #82
• fix(bundles): materialize schema-selected top-level objects by @korikuzma in #86
• docs: use consistent hyperlinks in grid cards by @korikuzma in #87
• docs: add initial work for civic oncogenicity vignette by @korikuzma in #88
• feat: add automatic light / dark mode to zensical by @korikuzma in #95
• fix(nb): use .root for coding.code DO url by @korikuzma in #96
• fix: make gkm figure look better by @korikuzma in #97
• fix(docs): use real iris (no ellipses) by @korikuzma in #98
• feat(docs): add examples of bundle schema and contents by @korikuzma in #99
• docs: make user story notebooks easier to find by @korikuzma in #102
• docs: apply feedback from @brendanreardon by @korikuzma in #105
• docs(notebook): clean up civic vignette and nb by @korikuzma in #107
• docs(data): show examples per sharing method and lead with concepts by @larrybabb in #106
• docs: update building blocks in about by @korikuzma in #108
• docs: apply feedback by @korikuzma in #110
• docs: align issue template and contribute.md for user stories by @korikuzma in #111
• docs(user-stories): add Individual-Centric Genomics Platform JPN by @korikuzma in #112
• fix(notebook): resolve errors in explore civic bundles by @korikuzma in #114
• feat: update gkm product versions by @korikuzma in #115
• docs(data): remove section by @korikuzma in #116
• User story: Harmonizing ClinVar by VRS identity (ClinGen) by @larrybabb in #117
• docs(toolkit): incl product versions table in index by @korikuzma in #118
• feat: another overhaul by @korikuzma in #119
• notebook: remove empty cell by @korikuzma in #120
• notebook: small cleanup by @korikuzma in #121

Full Changelog: 0.3.0...0.4.0

0.4.0-a2

What's Changed

• docs: update nb + try to add initial mybinder by @korikuzma in #81
• feat: add mybinder instructions by @korikuzma in #82

Full Changelog: 0.4.0-a1...0.4.0-a2

0.4.0-a1

What's Changed

• docs: link to reference implementations in toolkit index by @korikuzma in #52
• docs: align section urls with navigation names by @korikuzma in #53
• docs: overhaul by @korikuzma in #54
• fix(docs): remove unused md and update script by @korikuzma in #55
• docs: use consistent pillar names by @korikuzma in #56
• feat(bundles): add normalize and export helpers by @korikuzma in #58
• feat: validate bundle-local json pointers during loading by @korikuzma in #60
• refactor(test): reorg bundle tests by @korikuzma in #61
• feat!: resolve iriReferences targets from producer bundles by @korikuzma in #65
• docs: add public bundle repo to loading by @korikuzma in #66
• feat: add getting started guide by @korikuzma in #67
• feat: cache bundle repository artifacts locally by @korikuzma in #69
• docs: use better nav names by @korikuzma in #70
• docs: another overhaul by @korikuzma in #71
• chore: remove stale files by @korikuzma in #72
• feat!: validate bundle schemas and contents by @korikuzma in #73
• fix: export should support Pydantic models by @korikuzma in #74
• fix: Bundle.resolve() should enforce RFC 6901 pointer rules by @korikuzma in #75
• chore(docs): remove stale compatibility.md by @korikuzma in #76
• fix: preserve empty metadata in bundles by @korikuzma in #77
• fix: do not allow collection or metadata names to be overwritten during serialization by @korikuzma in #78
• fix: restrict pydantic model traversal to declared fields by @korikuzma in #79
• fix(repository): preserve encoded cache names when listed by @korikuzma in #80

Full Changelog: 0.4.0-a0...0.4.0-a1

0.4.0-a0

What's Changed

• docs: add setup instructions and add jupyterlab to notebook dep group by @korikuzma in #51

Full Changelog: 0.3.0...0.4.0-a0

0.3.0

What's Changed

• feat: add descriptions to civic bundle json schema example by @korikuzma in #24
• build: temp pin ga4gh versions by @korikuzma in #25
• feat: update civic bundles (variants) by @korikuzma in #26
• Bump mkdocs-material from 9.5.49 to 9.7.7 by @dependabot[bot] in #27
• docs: reorganize landing page around three pillars by @larrybabb in #28
• docs: restructure site around the three pillars by @larrybabb in #30
• docs(data): reframe the Data page around ways to share GKM knowledge by @larrybabb in #31
• docs(home): rename the Tooling pillar to Tools by @larrybabb in #32
• feat: migrate from mkdocs to zensical by @korikuzma in #34
• use ga4gh color palette by @korikuzma in #35
• add versioned publishing (mike) by @korikuzma in #36
• use ga4gh logo by @korikuzma in #37
• fix ga4gh logo placement + pillars should use ga4gh colors by @korikuzma in #38
• apply changes from 2026-09-04 feedback by @korikuzma in #39
• fix: gkm-explainer narrow to be consistent with wide by @korikuzma in #45
• feat: add public bundle repo access by @korikuzma in #46
• feat(docs): add dynamic public repository downloads by @korikuzma in #47

New Contributors

• @dependabot[bot] made their first contribution in #27

Full Changelog: 0.2.0...0.3.0

0.2.0

What's Changed

• minor suggestions after initial work by @korikuzma in #3
• docs: add dark mode toggle by @jsstevenson in #4
• v2: Three-pillar site reorganization (Approach C) by @larrybabb in #6
• feat: add initial gkm.starter package + update docs by @korikuzma in #9
• feat: update civic bundle examples by @korikuzma in #14
• feat!: rename the python package to ga4gh.gkm by @korikuzma in #13
• fix: update repo name references by @korikuzma in #15
• docs: add supported gkm product versions table for ga4gh.gkm by @korikuzma in #17
• feat!: remove registry wrapper functions and minor cleanup by @korikuzma in #19
• build: use ga4gh.va_spec pypi version by @korikuzma in #22
• feat: rename civic bundles (aid -> assertion) for clarity by @korikuzma in #23

New Contributors

• @korikuzma made their first contribution in #3
• @jsstevenson made their first contribution in #4
• @larrybabb made their first contribution in #6

Full Changelog: 0.1.0...0.2.0

0.1.0

GKS Starter Kit v0.1.0 — vignette library launch