Release v3.5.0
Allow user to draw only matches in synteny view
The synteny view can display long alignments, including insertions and deletions. However, particularly in chain files, the specific "insertion/deletion" markers are less meaningful as a large insertion+deletion pair is often used to connect more high-scoring alignments across large distances
Screenshot before/after toggling the setting to show only matches
Removal of the "Start screen" from jbrowse-web
This release removes the "start screen" from jbrowse-web. Instead of showing the start screen, users are just dropped straight into the main jbrowse 2 interface. This will hopefully "drop users into the action" faster.
Bug fixes
Some notable bug fixes include
- Fix for loading bigwig files created by
bigtools(a newer Rust-based bigwig toolkit) - Fix for certain breakpoint split view workflows fetching too much data and freezing
Feel free to let us know if you have any feedback
3.5.0 (2025-05-27)
🚀 Enhancement
- #5042 Avoid inferring CDS subfeatures from non-coding gene pred features (@cmdcolin)
- #5035 Use trash icon for uninstall in plugin store, and add version number string (@cmdcolin)
- #4735 Remove jbrowse-web start screen (@cmdcolin)
- #5025 Allow hiding insertion and deletion in synteny view to help chain file visualization (@cmdcolin)
🐛 Bug Fix
- Other
- #5037 Check that breakpoint split view is ready before fetching to avoid crash/large data fetching (@cmdcolin)
- #5033 Bump @gmod/bbi to fix loading bigwig files from bigtools (@cmdcolin)
- #5024 Fix lines crossing over view headers in breakpoint split view by only setting sticky view headers on top-level views (@cmdcolin)
core
🏠 Internal
core- Other
Committers: 2
- Colin Diesh (@cmdcolin)
- Garrett Stevens (@garrettjstevens) Done in 1.78s.
Done in 0.34s.