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5.4.2

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@susannasiebert susannasiebert released this 07 Jul 15:49
· 661 commits to master since this release
v5.4.2
ab23b3f

What's Changed

This is a bugfix release. It fixes the following problem(s):

  • Handle cases where the peptide sequence for a variant is missing from the fasta during reference proteome similarity matching. Instead of throwing in error, skip such entries and mark Ref Prot column as “Not Run”. by @susannasiebert in #1253
  • Write a log message for the above cases. by @susannasiebert in #1259
  • Fix bug in processing inframe deletions during aggregation causing the variant type to not be set correctly. by @susannasiebert in #1255
  • Respect --anchor-types parameter in pVACsplice. Previously, even when specifying this parameter it would be ignored and a hard-coded list of anchors would be used. by @susannasiebert in #1258
  • Update description of the --starfusion-file parameter to reflect that it can be used with Arriba data. by @susannasiebert in #1263

Full Changelog: v5.4.1...v5.4.2

Contributors

susannasiebert
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