v11.17.0
What's Changed
- Move abandoned/deprecated schema elements to deprecated.yaml per deprecation guide by @kheal in #2827
- Add QC metrics to NomAnalysis and low_molecular_formula_assignment to FailureWhatEnum by @Copilot in #2825
- Add QC slots to MetabolomicsAnalysis and failure enumeration values by @Copilot in #2828
- Bump protobuf from 6.31.1 to 6.33.5 by @dependabot[bot] in #2816
- Switch build commands to use LinkML unified CLI by @turbomam in #2839
- Generalize global
peak_assignment_countdescription and add NOM-specific slot_usage by @Copilot in #2840 - Make schema-derived JSON and YAML files downloadable via docs website by @eecavanna in #2302
- Add qc metrics to
MetaproteomicsAnalysisand add permissible values toFailureWhatEnumto accompany these by @kheal in #2822 - Replace poetry diagnostics with proper development guide in CLAUDE.md by @turbomam in #2845
- Remove dead code: about.yaml and experimental scripts by @turbomam in #2846
- Upgrade linkml and linkml-runtime to 1.10.0 by @turbomam in #2849
- Search capability optimizations on NMDC schema docs site by @sujaypatil96 in #2819
- Add
submission_portal_identifierslot toProvenanceMetadataby @turbomam in #2820 - Reorganize Makefiles and remove RDF conversion tooling by @turbomam in #2848
- Document OWL generation: config, portals, and upcoming changes by @turbomam in #2484
- Document readonly metaslots directive and architectural changelog by @turbomam in #2855
- Fix interleave_yaml.py and re-ID 27 duplicate IDs in source example files by @turbomam in #2537
- Modernize pyproject.toml: PEP 621 format with dependency groups by @turbomam in #2847
- Document pre-release process and tag format by @turbomam in #2866
- Fix pre-release tag format: -rc1 not -rc.1 by @turbomam in #2867
- Fix dynamic versioning for PEP 621 pyproject.toml by @turbomam in #2869
- Document that release prep must go through a PR by @turbomam in #2870
- Release prep: regenerate artifacts for v11.17.0-rc.4 by @turbomam in #2871
- Update raw file paths artifact for missing NEON legacy soil samples by @sujaypatil96 in #2873
- Move add_date/mod_date from Biosample and DataGeneration into provenance_metadata (range: datetime) by @turbomam in #2833
Full Changelog: v11.16.1...v11.17.0