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v11.17.0

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@turbomam turbomam released this 11 Mar 21:46
· 376 commits to main since this release

What's Changed

  • Move abandoned/deprecated schema elements to deprecated.yaml per deprecation guide by @kheal in #2827
  • Add QC metrics to NomAnalysis and low_molecular_formula_assignment to FailureWhatEnum by @Copilot in #2825
  • Add QC slots to MetabolomicsAnalysis and failure enumeration values by @Copilot in #2828
  • Bump protobuf from 6.31.1 to 6.33.5 by @dependabot[bot] in #2816
  • Switch build commands to use LinkML unified CLI by @turbomam in #2839
  • Generalize global peak_assignment_count description and add NOM-specific slot_usage by @Copilot in #2840
  • Make schema-derived JSON and YAML files downloadable via docs website by @eecavanna in #2302
  • Add qc metrics to MetaproteomicsAnalysis and add permissible values to FailureWhatEnum to accompany these by @kheal in #2822
  • Replace poetry diagnostics with proper development guide in CLAUDE.md by @turbomam in #2845
  • Remove dead code: about.yaml and experimental scripts by @turbomam in #2846
  • Upgrade linkml and linkml-runtime to 1.10.0 by @turbomam in #2849
  • Search capability optimizations on NMDC schema docs site by @sujaypatil96 in #2819
  • Add submission_portal_identifier slot to ProvenanceMetadata by @turbomam in #2820
  • Reorganize Makefiles and remove RDF conversion tooling by @turbomam in #2848
  • Document OWL generation: config, portals, and upcoming changes by @turbomam in #2484
  • Document readonly metaslots directive and architectural changelog by @turbomam in #2855
  • Fix interleave_yaml.py and re-ID 27 duplicate IDs in source example files by @turbomam in #2537
  • Modernize pyproject.toml: PEP 621 format with dependency groups by @turbomam in #2847
  • Document pre-release process and tag format by @turbomam in #2866
  • Fix pre-release tag format: -rc1 not -rc.1 by @turbomam in #2867
  • Fix dynamic versioning for PEP 621 pyproject.toml by @turbomam in #2869
  • Document that release prep must go through a PR by @turbomam in #2870
  • Release prep: regenerate artifacts for v11.17.0-rc.4 by @turbomam in #2871
  • Update raw file paths artifact for missing NEON legacy soil samples by @sujaypatil96 in #2873
  • Move add_date/mod_date from Biosample and DataGeneration into provenance_metadata (range: datetime) by @turbomam in #2833

Full Changelog: v11.16.1...v11.17.0