3.0.0 - Icebound Insect

Major release featuring:

• module updates
• faster bclconvert output handling
• modified output structure, featuring qc reports per library and enhanced run qc through multiqc_sav
• fastq output when aligner equals false, with falco report
• per sample analysis definition for more flexibility

Contributions

• Update regex pattern for BED file path validation by @matthdsm in #137
• coverage - filter seqcap genelists by @matthdsm in #133
• only use first versions of modules by @nvnieuwk in #136
• Workflow output definitions by @nvnieuwk in #138
• Fix nextflow lint warnings + template update by @nvnieuwk in #139
• Fix/bclconvert gcp by @matthdsm in #140
• Chore/bump modules by @matthdsm in #142
• output files in library subdir where possible by @matthdsm in #143
• Enable fastq outputs by @matthdsm in #146
• optimize resources for gcp by @matthdsm in #148
• Add splice junctions and junctions to rna output by @nvnieuwk in #150
• Fix splice junctions file name by @nvnieuwk in #151
• Add multiqc_cmgg with custom template by @matthdsm in #152
• migrate analysis and resource profiles to external repo by @matthdsm in #153
• Feat/fastq qc by @matthdsm in #156
• Feat: per sample params by @matthdsm in #155
• Migrate pipeline to topic only by @matthdsm in #157
• Feat: MultiQC SAV by @matthdsm in #160
• Bump modules by @matthdsm in #161
• Update/docs by @matthdsm in #162
• try nf-metro by @matthdsm in #158
• Preprocessing v3.0.0 by @matthdsm in #159

Full Changelog: 2.0.6...v3.0.0