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nf-core/eager pull request
This addresses two issues at once. Firstly it adds earlier checks for the presence of MALT(Extract) auxilary files (databases etc). It also simplifies the treatment of unmapped reads to remove the extra parameters. This closes #497 and #501.
PR checklist
nextflow run . -profile test,docker --paired_end).nf-core lint .).docsis updatedCHANGELOG.mdis updatedREADME.mdis updatedLearn more about contributing: CONTRIBUTING.md