Skip to content

Add override parameter for experiment summary container#186

Merged
Aratz merged 6 commits intonf-core:devfrom
Aratz:feature/pna-2110_pixelatorES_container
Feb 26, 2026
Merged

Add override parameter for experiment summary container#186
Aratz merged 6 commits intonf-core:devfrom
Aratz:feature/pna-2110_pixelatorES_container

Conversation

@Aratz
Copy link
Contributor

@Aratz Aratz commented Feb 24, 2026

This PR addresses the following:

  • add a parameter experiment_summary_container to let users use custom versions of ES
  • fix schema issues that went under the radar in Chore/fix json schema types #184
  • Add schemas to nf-test triggers

PR checklist

  • This comment contains a description of changes (with reason).
  • If necessary, also make a PR on the nf-core/pixelator branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • CHANGELOG.md is updated.

@Aratz Aratz self-assigned this Feb 24, 2026
@nf-core-bot
Copy link
Member

Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.5.1.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

@Aratz Aratz force-pushed the feature/pna-2110_pixelatorES_container branch from 642bc4c to 039cb6e Compare February 24, 2026 08:15
@Aratz Aratz force-pushed the feature/pna-2110_pixelatorES_container branch from 039cb6e to 56b329f Compare February 24, 2026 08:28
`file-path` checks the path is not a directory, which doesn't work well
with `pipelines_testdata_base_path`.
@Aratz Aratz force-pushed the feature/pna-2110_pixelatorES_container branch from e664f65 to f74e03b Compare February 26, 2026 08:43
@Aratz Aratz marked this pull request as ready for review February 26, 2026 09:03
@Aratz Aratz requested a review from a team as a code owner February 26, 2026 09:03
@Aratz Aratz merged commit a80f070 into nf-core:dev Feb 26, 2026
21 checks passed
@Aratz Aratz mentioned this pull request Feb 26, 2026
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants