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Postrelease 2.3.1
Co-authored-by: Adrien Coulier <adrien.coulier@pixelgen.com>
…op-mpx-support Drop MPX support
…omponent-size Default to 8000 UMIs as minimum component size
Co-authored-by: Adrien Coulier <adrien.coulier@pixelgen.com>
…ma-types Chore/fix json schema types
`file-path` checks the path is not a directory, which doesn't work well with `pipelines_testdata_base_path`.
…iner Add override parameter for experiment summary container
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Fix review comments regarding 3.0.0 release
FriederikeHanssen
requested changes
Mar 3, 2026
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Reminder to update the github keywords once the release is out
Putting a request changes to make sure the detect_technology behavior is intended
Co-Authored-By: Friederike Hanssen <friederike.hanssen@seqera.io>
Fix 2nd round of comments for v3.0.0 release
Contributor
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AWS test run here: https://cloud.seqera.io/orgs/nf-core/workspaces/AWSmegatests/watch/4dQY1fAINZjh7t/logs please check that it works before releaseing |
Contributor
Author
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Thanks for your review! The link to the AWS megatests doesn't work though, I land on the "Organizations" page and there is an error message saying the the nf-core organization was not found. I logged in to seqera through my github account, so I was hoping it would import the organization from there, but maybe that's not the case? |
Contributor
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no that unfortunately doesn't work. we need to add you. Will do this now. |
Contributor
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done |
Contributor
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Thank you! |
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[3.0.0] - 2026-02-23
Changed
Removed
Enhancements & fixes
Parameters
--experiment_summary_container--save_amplicon_reads--trim_front--trim_tail--max_length--min_length--max_n_bases--avg_qual--dedup--remove_polyg--adapterqc_mismatches--save_qc_passed_reads--save_qc_failed_reads--demux_mismatches--demux_min_length--save_demux_processed_reads--save_demux_failed_reads--markers_ignore--algorithm--max_neighbours--collapse_mismatches--collapse_min_count--save_collapsed_reads--multiplet_recovery--graph_max_refinement_recursion_depth--graph_max_edges_to_split--graph_min_count--save_edgelist--min_size--max_size--dynamic_filter--aggregate_calling--save_raw_component_metrics--save_annotate_dataset--skip_analysis--compute_polarization--compute_colocalization--use_full_bipartite--polarization_transformation--polarization_n_permutations--polarization_min_marker_count--colocalization_transformation--colocalization_neighbourhood_size--colocalization_n_permutations--colocalization_min_region_count--colocalization_min_marker_count--save_analysis_dataset--skip_layout--no_node_marker_counts--layout_algorithm--skip_reportNote
Parameter has been updated if both old and new parameter information is present.
Parameter has been added if just the new parameter information is present.
Parameter has been removed if new parameter information isn't present.