[composer-based] Register each rule only once, add --composer-based process filter

[TomasVotruba]

1. Each rule is registered only once

RectorConfig::rule() tagged the class on every call. A rule registered by more than one set got one tag entry per set, and giveTagged(RectorInterface::class) handed the same singleton back once per entry.

That means the rule was run repeatedly on every node, and listed repeatedly in list-rules / composer-based:

  AnnotationWithValueToAttributeRector           phpunit/phpunit   >=10.0     11.5.56.0   yes
- AnnotationWithValueToAttributeRector           phpunit/phpunit   >=10.0     11.5.56.0   yes
  MockObjectArgCreateStubToCreateMockRector      phpunit/phpunit   >=11.0     11.5.56.0   yes
- MockObjectArgCreateStubToCreateMockRector      phpunit/phpunit   >=11.0     11.5.56.0   yes
- MockObjectArgCreateStubToCreateMockRector      phpunit/phpunit   >=11.0     11.5.56.0   yes

Reproduced with 3 rule() calls for the same class - $container->tagged(RectorInterface::class) returned 3 instances before, 1 after.

 $this->singleton($rectorClass);
-$this->tag($rectorClass, RectorInterface::class);

-// for cache invalidation in case of change
-SimpleParameterProvider::addParameter(Option::REGISTERED_RECTOR_RULES, $rectorClass);
+// the same rule can be registered by multiple sets, tag it only once,
+// otherwise it is run twice on every node and listed twice in the reports
+if (! isset($this->registeredRectorClasses[$rectorClass])) {
+    $this->registeredRectorClasses[$rectorClass] = true;
+
+    $this->tag($rectorClass, RectorInterface::class);
+
+    // for cache invalidation in case of change
+    SimpleParameterProvider::addParameter(Option::REGISTERED_RECTOR_RULES, $rectorClass);
+}

Same for composer bound rule configurations - the same rule class + package + constraint + configuration is reported once, no matter how many sets register it.

2. --composer-based process option

Runs only the rules that are bound to an installed composer package version - rules implementing ComposerPackageConstraintInterface, and rules whose configuration was registered through ruleWithConfigurationComposerVersionBound().

vendor/bin/rector process src --composer-based --dry-run

Complements the composer-based command from #8247, which reports the same set of rules and configurations without running them.