Version 5.5.1

Changes

Additions

• Added uwot.init parameter to RunUMAP to optionally customize method of UMAP initialization (#10386)

Fixes

• Fixed bug in PrepSCTFindMarkers in the multi-model case that produced zero counts for some valid genes due to an incorrect filter for theta (#10410)
• Fixed issue with FindClusters not setting metadata properly when a vector of resolutions is passed to resolution and a custom cluster name is specified (#10385)
• Updated logic in Parenting to extract function names from the call stack efficiently, avoiding slowdowns when functions are run with do.call (#10161)
• Fixed bug in PrepDR5 affecting RunPCA on v5 objects, where supplied features could be incorrectly dropped when non-supplied features had zero variance (#10398)
• Updated LabelClusters to use fill argument for label background color in geom_label* when specified, instead of the default per-cluster color (#10404)