v1.8.2

What's Changed

⚠️ Breaking Changes

• Use Geary's C normality variance in spatial_autocorr (fixes #1183) by @gaoflow in #1197

Added

• Functions to QC histopathology images by @timtreis in #1036
• Add derive_mpp_from_shapes utility by @timtreis in #1172
• Add tiling QC metric for tile-boundary segmentation artifacts by @timtreis in #1157
• Stain normalization: foundations by @timtreis in #1178
• spatial_neigbours extensibility features and clarification by @selmanozleyen in #1147
• Stain normalization: Reinhard color transfer by @timtreis in #1191
• Stain normalization: Macenko/Vahadane decomposition + background estimator by @timtreis in #1196
• feat: add cells SpatialData dataset and update S3 key paths in registry by @selmanozleyen in #1211
• [2/4] Add calculate_image_features with skimage + squidpy-native features by @timtreis in #1190

Changed

• Add explicit error handling in _make_tiles.py by @timtreis in #1130
• fix: remove unused parameters in co_occurence by @selmanozleyen in #1121
• feat: remove unnecessary parallelize usage in sepal by @selmanozleyen in #1120
• Parallelize spatial neighbors by @grst in #1198

Deprecated

• Deprecate Napari Interactive by @selmanozleyen in #1082

Removed

• remove mask_polygon by @selmanozleyen in #1148

Fixed

• fix: require spatialdata>=0.7.2 to drop the xarray-schema/pkg_resources break by @timtreis in #1117

New Contributors

• @gaoflow made their first contribution in #1197

Full Changelog: v1.8.1...v1.8.2