🎯 ChIP peak Annotation, Comparison and Visualization

chromatin Variability Across Regions (of the genome!)

Basic workflow for ATAC-seq analysis

A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data

A small R package to make sequencing read coverage plots in R.

R package IReNA

Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis

Cell type specific enrichments using finemapped variants and quantitative epigenetic data

A complete Snakemake pipeline for detecting allele specific expression in RNA-seq

ATACseq tools for Bioconductor

Processing and analysis scripts for Xu Qiu manuscript

Processed single cell sequencing datasets

A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)

deepStats: a stastitical toolbox for deeptools and genomic signals

AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project

Code related to Swanson, et. al. for TEA-seq, ICICLE-seq, and scATAC-seq data processing, analysis, and visualization

A snakemake workflow to process ATAC-seq data

Analyses combining ATAC-seq, RRBS, and RNA-seq data for purple urchins

A robust statistical test for TF footprint data analyses

Extract Sequence from Genome According to Annotation File