A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
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Updated
Jul 10, 2024 - R
A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.
An R shiny web server for linking of ATAC-seq to gene expression data
An R-package for daily tasks required to handle biological data as well as avoid re-coding of small functions for quick but necessary data management.
A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)
🎯 ChIP peak Annotation, Comparison and Visualization
R package for QC of enrichment based NGS assays. ChIP-seq, cut&run, ATAC-seq, etc.
chromatin Variability Across Regions (of the genome!)
Extract Sequence from Genome According to Annotation File
Cell type specific enrichments using finemapped variants and quantitative epigenetic data
process and analyze paired-end ATAC-Seq data
Definitive endoderm differentiation of human ESCs in G1 phase of the cell cycle
AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
Chromatin accessibility analysis of spaceflight (NASA) mouse brains using ArchR (Master's Thesis Project)
Scripts to run footprinting and motif-flanking accessibility analysis in DNase-seq/ ATAC-seq data
Analyses combining ATAC-seq, RRBS, and RNA-seq data for purple urchins
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