atac-seq
Here are 169 public repositories matching this topic...
Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
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Jul 15, 2024 - Python
Computational biology/bioinformatics workflows, codes, and concept notes on NGS data
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Jul 15, 2024 - HTML
A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
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Jul 10, 2024 - R
A Snakemake workflow to split, filter, normalize, integrate and select highly variable features of count matrices resulting from experiments with sequencing readout (e.g., RNA-seq, ATAC-seq, ChIP-seq, Methyl-seq, miRNA-seq,...) including diagnostic visualizations.
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Jul 10, 2024 - Python
A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.
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Jul 10, 2024 - R
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
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Jul 8, 2024
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
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Jul 7, 2024 - Python
CWL based Bioinformatics Workflows
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Jul 12, 2024 - Common Workflow Language
An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq
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Jul 15, 2024 - Python
An R shiny web server for linking of ATAC-seq to gene expression data
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Jun 25, 2024 - R
Instructions on how to perform chromatin accessibility data pre-processing and analyses (focusing on bulk ATAC-seq)
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Jun 21, 2024 - Python
Single cell ATAC and RNA seq data analysis
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Jun 13, 2024 - Jupyter Notebook
Snakemake pipeline for analysis and normalization of ATAC-seq data starting from fastq.gz files.
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Jun 12, 2024 - Python
An R-package for daily tasks required to handle biological data as well as avoid re-coding of small functions for quick but necessary data management.
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Jun 12, 2024 - R
A toolkit for working with ATAC-seq data.
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Jun 11, 2024 - Python
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