Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)
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Updated
Apr 5, 2024 - Python
Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)
AMR/VF LGT focused bacterial genomics analysis workflow
Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools
Origin of Chromosomal Replication Assessment. Python tool for the analysis of circular bacterial DNA sequences in order to find their origin of replication.
Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.
DELEAT is a bioinformatic analysis pipeline for the design of large-scale genome deletions in bacterial genomes.
A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples
Analyzes the GC skew of bacterial chromosomes using multiple calculations. Outputs a data frame of GC skew values and wiggle files for visualization.
analyzing bacterial genome based ontologies and phylogenomics informativeness
Food wastE biopEptiDe claSsifier: from microbial genome to biopeptides function
Python scripts that predict and plot the location of the origin of replication (oriC) of circular bacterial genomes based on Z-curve analysis, GC-skew analysis. and certain gene locations
Medium scale identification of genomic neighbors in bacterial genomes
interpro domain analyzer
interpro to graphs for analyzing domains.
bacterial genome deep learning using keras
Pipeline for de novo assembly of bacterial genomes from paired-end Illumina reads
Bacterial plasmid annotation pipeline
pangenome metagenomics normalizer for gene annotations specifically gene ontologies.
Bioinformatics
genome annotation analyzer for the microbiome analysis
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