Simple script to color code amino acids according to ConSurf analysis
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Updated
Mar 3, 2017 - Python
Simple script to color code amino acids according to ConSurf analysis
semi-supervised deep learning for classification of molecular structures
This is code to support the computation of stoichiometric equations for the Thermodynamic Electon Equivalents Model (TEEM) developed by Rittman and McCarty.
Search for new PDB structures corresponding to a search term and deposited after a certain date.
It is a python script for generation of Phylogenetic trees from a given DNA or Protien Sequences.
A simple DNA transcription/translation app written in Python and kivy
Bioinformatics (biochemistry) data processing scripts for NMR, and protein data analysis (PyMOL)
Python library for dealing with metalloprotein structures
Extension of UCSF Chimera
RIVEM software plugin for UCSF Chimera
Visualize alpha-helical peptide sequences in Python using helical wheels and wenxiang diagrams
Collection of scripts used for an upper-division biochemistry lab sequence.
This code attempts to predict the influence of osmolytes on protein stability
RBApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Graphical user interface allows easy access to the multiscale model-free idealization methods in the R-package clampSeg (https://cran.r-project.org/package=clampSeg). It supports the model-free segmentation methods JSMURF (https://ieeexplore.ieee.org/document/6655999), JULES (https://ieeexplore.ieee.org/document/8374882) and HILDE (https://arxiv…
A script to run docking experiments in AutoDock Vina for several ligands at once with technical replicates.
Toolkit for quantifying errors in non-equilibrium data
Software for the Analysis and Continuous Monitoring of Electrochemical Systems.
A collection of python scripts for chemistry and biochemistry
Python package and workflow for EFM calculation via (mp)lrs and efmtool
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