A Notebook for my Career on DS
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Updated
Feb 14, 2018 - HTML
A Notebook for my Career on DS
GREIN : GEO RNA-seq Experiments Interactive Navigator
Manuscript describing ChronQC is now available online in Bioinformatics
An unsupervised transfer learning approach for rare disease transcriptomics
NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
Analysis of insertions in the genomes and proteins of coronaviruses. Illustration: AvH. (2020). Covid-19 cracked <http://doi.org/10.5281/zenodo.3734643>
Maximum likelihood phylogeny and testing molecular models of evolution for cytochrome c oxidase subunit 1 sequences of Polynoidae from Barcode of Life Database
Documentation for various ESR projects.
Teaching material used in the "Advanced Bioinformatics for Next-Generation Sequencing" class, University of Copenhagen, 2021
A bare bones tutorial on how to analyse spatial transcriptomics data from raw sequencing reads to visualising spatially distinct features
scRNA Analysis tutorials
workflow and notes on large virus genome assembly and snp call using FastQC, Trimmomatic, bowtie2, and samtools.
Whole-Genome-Sequencing analysis pipeline of Ascochyta rabiei isolates
Phigaro is a scalable command-line tool for predicting phages and prophages
Supplementary files for follicular lymphoma project 2021
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