Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
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Updated
Jan 17, 2024 - Java
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)
ASAP : Automated Single-cell Analysis Pipeline
Genopo a.k.a. F5N - A nanopore sequencing analysis toolkit for Android smartphones https://nanoporetech.com
Workflow management system for the automated and distributed analysis of large-scale experimental data.
Decision-driven action launching system
Estimate the relative abundance of sequence reads originating from different species in a sample using the IRIDA system
Determine the MLST sequence type for samples using PubMLST schemes in the IRIDA system
Detect the presence of specific resistance genes in a sample using the IRIDA system
Call core SNPs agains a reference genome for a set of bacterial isolates, and build a phylogenetic tree based on the core-genome SNP information.
This package contains the BLAST Viewer Tool.
Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.
Determine the sequence type of specific transposable elements in bacterial isolates.
Spring Batch and biological data
Genopo a.k.a. F5N - a portable DNA analysis toolkit for nanopore data https://nanoporetech.com
Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data
Human RNA virus genotyping
The power of the R's differential gene expression analysis packages, with no programming required.
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