Package for fetching metadata and downloading data from SRA/ENA/GEO
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Updated
Sep 17, 2023 - Python
Package for fetching metadata and downloading data from SRA/ENA/GEO
A tool to circularize genome assemblies
ATAC-seq and DNase-seq processing pipeline
Antimicrobial Resistance Identification By Assembly
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
RNA sequencing analysis software
A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
A bioinformatics pipeline to analyze mtDNA from NGS data
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
HemTools: a collection of NGS pipelines and bioinformatic analyses
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
de novo virus assembler of Illumina paired reads
A fully automated gene annotator from RNA-Seq expression data
A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly
Python toolkit for building restartable pipelines
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