Analysis Pipeline for Single Cell ATAC-seq
ConsensusTME Gene Sets and R Script
OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.
A Nextflow Genome-Wide Association Study (GWAS) Pipeline
Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set
This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the pathogen. The scientific community and governments of other countries are looking for actions along these lines. The United Kingdom recently established a research network for genomic studies of SARS-CoV-2Covid…
🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
Bioinformatics pipeline for nanopore sequencing data
A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like pipeline toolkit for the R language.
This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
Baltica: integrated differential junction usage
👨🔬 Analysis Pipelines and Useful Tools
Repository holding the code for the drugfindR R package
Quality Control, Mapping and Reads Count for RNA-Seq Analysis
A Snakemake pipeline for RRBS data analysis
NanoASV official repo
DEEPEST-Fusion is a fusion detection algorithm specially designed for screening massive cancer sequencing databases
A pipeline to analyse marine fish amplicon data
Analysis functions for deep sequenced immune repertoire (Repseq) datasets in R
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