Variant Calling Pipeline Using GATK4 and Nextflow
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Updated
Feb 16, 2023 - Nextflow
Variant Calling Pipeline Using GATK4 and Nextflow
See the main fork of this repository here >>>
Genotype Imputation Pipeline for H3Africa
DEPRECIATED! Please use nf-core/tools instead
Repository of Nextflow+BioContainers workflows
A pipeline for bioinformatics analysis of bacterial genomes
Comprehensive pipeline for detection of TB from ONT adaptive sequencing and amplicon data.
A pipeline for assembling and annotation of vectors
Generate simulated illumina sequence reads from a reference sequence
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Pre-processing of multiplexed CRISPR / shRNA Screens (deprecated)
A Nextflow Assembly Pipeline for Downstream Analysis of long reads (ONT) - Genome Assembly .
Reproducible evaluation of short read mappers
FusionFlow is a bioinformatic pipeline that enables the detection of gene fusions from RNA and DNA data.
A nextflow workflow to build referenceseeker DBs on the fly
Retrieve Files from VBCF Sequencing Facility
Taxonomic profiling ONT metagenomics reads using minimap2
Pipeline for performing routine genome assembly
Simulate genomic variation, based on input reference genomes
Nextflow Pipeline for Strain Resolution from Long Reads
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