A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
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Updated
May 28, 2024 - C++
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
Incremental building of phylogenetic distance tree
StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.
Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!
Fast sequence vectorization for metagenomics analysis. Converts input sequences into k-mer coverage vectors, fast! Read more detail in our paperhttps://doi.org/10.1093/bioinformatics/btaa441
Linear-time de novo Long Read Assembler
A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
A gRNA database generation tool.
A pipeline for quick and dirty QC of your small RNA-seq libraries focused on piRNA.
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.
PARamrfinder is a high performance parallel tool to predict allele-specific DNA methylation (ASM) in mammals in the absence of SNP data.
Split a multifasta file into many fasta files containing a single sequence, or extract a list of sequences/contigs. Supports compressed input and output files.
A tool for mass spectrometry data analysis.
BLAST without Sys.Call()
Common bioinformatic tools in C/C++
A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.
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