Bioinformatics containers
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Updated
Jul 9, 2024 - Dockerfile
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
Bioinformatics containers
📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics
This repository contains Docker files for the images maintained by the Phenotypic Evolution Group at the Institute for Molecular and Cell Biology / Instituto de Investigação e Inovação em Saúde da Universidade do Porto.
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).
Dockerfiles for tools commonly used for phylogenetic analyses
🐳 Bio-dockers: dockerized bioinformatic tools
Repository with all my container recipes 👩🍳
Docker container for bioinformatics tools and pipelines
A repository with recipies for packaging bioinformatics tools into docker images that are hosted on docker hub.
Dockerfiles used to create the docker images containing most of the software we use.
Docker and Singularity containers for Bioinformatics programs
Resources for using docker for biologists
Learn how to annotate a genome with Rfam families using Infernal
Repo for running command line-based PatMatch in Jupyter environment provided via Binder.
A collection of Dockerfiles for different containers I use.