flashcard / quiz app for Bioinformatics that is available on Android
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Updated
Jan 16, 2023 - Java
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
flashcard / quiz app for Bioinformatics that is available on Android
BLAST DataBase Manager
Spring Batch and biological data
A command line tool to annotate SNPs including p-value estimation about there clinical significance
A Java wrapper for the RCSB PDB REST APIs
Senior project designed to take in a large text file of DNA sequences to parse, filter, and format for NCBI's BLAST tools.
Use the MTI tooling from NCBI to map UMLS and MESH terms to arbitrary text.
Sequence management tools relying on the Bioinformatics Databank Manager System, BeeDeeM (miror).
Handlegraph RDF writers in java for working with variation graph genome data.
Back Up of Trimmomatic for learning and testing/modification. Find Original Code at: https://github.com/usadellab/Trimmomatic
An object-oriented cheminformatics library.
Searches for desired genes in an XLSX file & compares multiple VCF/XLSX files
UFCG: Universal Fungal Core Genes
Program used in combination with mgfToBinStack to import data from Mascot to be used in QuiXoT by converting Mascot's DAT files into QuiXML files.
The bcd supertrees algorithm implemented in java as a command line tool.
K-mer spectrum corrector based on Hadoop
Hidden Markov Model
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Java program that reads fastq files and converts them to fasta files