Repository of Jupyter Notebooks created by the Bio2Byte group
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Updated
May 23, 2024 - Jupyter Notebook
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
Repository of Jupyter Notebooks created by the Bio2Byte group
Notebooks for exercise and reference
A lightweight introduction to NextFlow, a workflow description language and engine for (mainly) bioinformatics workflows. Leverages notebooks for easy teaching.
📓 Minimal cheatsheet for functions in the phyloseq R package
Notebooks and examples for DeepVariant on Spark project.
General-purpose repository for illustrative examples on coding and data analysis
Here you can find various (Jupyter) notebooks and bioinformatics scripts (mostly Linux shell) organized in folders depending on the topic or source
Repo of data science and machine learning projects from highschool
IPython notebooks used for interactive learning
Jupyter notebooks used for training
iTASSER Notebook
A jupyter notebook about DNA double strand break analysis from fluorescence images using Python
Jupyter notebook to analyize, transform, and predict intracranial hemorrhaging from CT scan images using a neural network.
Deep unsupervised learning methods for the identification and characterization of TCR specificity to Sars-Cov-2
Deconvolution of CRC in organoid and fibroblast bulk data identifying epithelial cell types proportions
Example notebooks of PyFlowBAT functionality.
My Machine Learning code, using Python3 and R, mainly in Jupyter Notebook.
Some phosphoproteomics useful notebooks and sources