A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
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Updated
Feb 17, 2023 - Jupyter Notebook
A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
An implementation of MNN (Mutual Nearest Neighbors) correct in python.
Accelerate data driven research on embryos with deep learning models 🔬
The U-Net Segmentation plugin for Fiji (ImageJ)
Parser and database to index the terpene profile of different strains of Cannabis from online databases
Phigaro is a scalable command-line tool for predicting phages and prophages
Nucleic and amino acid primitive types
GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language
Digital filtering of a ECG signal
A python library for advanced lattice light-sheet image analysis
Multi-Layer Random Forest, with Circularity Features, for Image Segmentation
Multi-Layer Random Forest [for Image] Segmentation
Neural networks for amino acid sequences
PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis
Kaggle Competitions: Find the nuclei in divergent images to advance medical discovery
HumanMine - an InterMine with human genomic data
A Pure-Python parser of HMMER3 output
A package for automated quantification of non-orthogonal, multiplexed ddPCR data
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