Biotech with biopython

Image acquisition routine for the Scanning Lab at the Allen Institute for Brain Science

Python/Bash/MATLAB tools for analyzing and visualizing high-throughput biochemical array data

FLYCOP (FLexible sYnthetic Consortium OPtimization)

My PhD dissertation

Solves the buffer preparation vessel sizing and assignment problem using mixed integer linear programming.

Bacterial cells can be attached to the surface of a glass slide through their flagella which results in the cell body to rotate because of the presence of the bacterial flagellar motor, this program calculates angular velocity, number of frames rotated in clockwise direction and anti clockwise direction, frequency, length of cell, the center of …

Bioquant is an (undeployed) experimental graphic user intefrace for the Biopython computational biology library. Its aim is to facilitate usage of computational molecular biology tools for Life Science researchers. Currnet app functionality consists of basic parsing and rudimentri genomic analysis of Fasta records.

Un script de python que usa BLAST, MUSCLE y PROSITE para analizar una serie de proteínas

Web scraping biotech company information

I developed Machine Learning Software with multiple models that predict and classify AID362 biology lab data. Accuracy values are 99% and above, and F1, Recall and Precision scores are average (average of 3) 78.33%. The purpose of this study is to prove that we can establish an artificial intelligence (machine learning) system in health. With my…

The SiLA 2 Manager for rapid device integration and workflow automation. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711022000103

A library for the analysis of toehold switch riboregulators created by the iGEM team City of London UK 2021.

Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.

DNA toolkit package for easier analysis

A Python molecular biology CAD tool with a dead-simple user interface

Deep Learning Template for bacterial image classification in Keras.

Implementation of Needleman-Wunsch's algorithm for sequences alignment using BLOSUM62 matrix

genomics, biochemistry, biotechnology, cell biology, biophysics, ecology

Programming interface to resource allocation modelling with the Resource Balance Analysis (RBA) method. This is version 1.0.3