Collection of scripts for bacterial genomics

MView extracts and reformats the results of a sequence database search or multiple alignment.

MFannot is a program for the annotation of mitochondrial and plastid genomes

Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools

Annotate sequences by BLAST using NCBI taxonomy information

Finds reciprocal-best-hit matches between two all-by-all BLAST searches

Wrapper script that calls formatdb on nr database and then runs blastall against formatted db and parses the output.

Quickly identify and generate primers for diagnostic loci

Scripts and pipelines by Merce Montoliu-Nerin

Filter out sequences in FASTQ files that match a reference genome