forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
-
Updated
Jun 14, 2024 - Java
forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
Scansite searches for motifs within proteins that are likely to be phosphorylated by specific protein kinases or bind to domains such as SH2 domains, 14-3-3 domains or PDZ domains.
A project for exploring differentially active signaling paths related to proteomics datasets
Artificial Life Simulation of Bacteria Motion depending on DNA
Diffusion-limited aggregation (DLA) is the process whereby particles undergoing a random walk due to Brownian motion cluster together to form aggregates of such particles.
Computer Science Infotainment. Tribute to the Article Series in Scientific American and their german release Spektrum der Wissenschaft
TREND platform for protein function and evolution analysis.
A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.
Programming and numeric computing platform for math modeling and visualization with fully functional programming language
A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.
Computing the Edge of the Mandelbrot Set with a Turing Machine
Useful NGS utilities for everyday use in the form of stand-alone tool.
The Smith-Waterman algorithm finds the optimal alignment of two sequences using dynamic programming techniques; Smith-Waterman is commonly used for DNA sequence alignment
Various utilities regarding Levenshtein transducers. (Java)
the SBML module of BiVeS
Automated Reproducibility and Testing Environment for Licensed Software
PoGo is a proteogenomic tool developed primarily by Christoph Schlaffner. PoGo's purpose is to map peptides identified through mass spectrometry to a given genome. My edits of the tool are in order to expand its functionality to allow for the input of novel peptides without protein-coding region (CDS) annotation. The program is open-source and a…
Scansite searches for motifs within proteins that are likely to be phosphorylated by specific protein kinases or bind to domains such as SH2 domains, 14-3-3 domains or PDZ domains.
Add a description, image, and links to the computational-biology topic page so that developers can more easily learn about it.
To associate your repository with the computational-biology topic, visit your repo's landing page and select "manage topics."