cross-contamination of plant virus base on read assignation
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Updated
Sep 14, 2023 - Python
cross-contamination of plant virus base on read assignation
Simulate the diffusion of contaminants in water networks.
Module and script to remove contamination in assembled genomes before submission to ncbi
Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification
A platform that enables users to perform private benchmarking of machine learning models. The platform facilitates the evaluation of models based on different trust levels between the model owners and the dataset owners.
Reference-based, heuristic algorithm for identification of potential contaminants in mothur-formatted OTU tables
MitoSIS (Mitochondrial Species Identification System) is a wrapper for mitochondrial genome assembly and identification of sample contamination or mislabeling.
GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.
🗑️🦷 decOM 🦷🗑️
Rapid and simple taxonomic profiling of genome and metagenome contigs
The LM Contamination Index is a manually created database of contamination evidences for LMs.
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
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