Multiple Objective Optimization work for optimizing aptamer binding to new targets done in collaboration with Chris Knight and Josh Knowles
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Updated
Nov 19, 2017 - C++
Multiple Objective Optimization work for optimizing aptamer binding to new targets done in collaboration with Chris Knight and Josh Knowles
MONKEY is a set of programs designed to search alignments of non-coding DNA sequence for matches to matrices representing the sequence specificity of transcription factors
Basic seed-and-extend DNA sequence read aligner
Archival Compression for hiGh-Throughput sequeNcing data
High performance tools for analyzing coronavirus genome
This is a project for Bioinformatics class. It's about finding mutations using 3th gen sequencing method.
Proof Of Concept for simple Base-2 binary to Base-4 DNA-code representation conversion
Looper is an ultrafast DNA tandem repeat identification tool which works on basic arithmetic rules.
this CLI finds the repeated STRs in a given DNA sequence
A package for fast genomic sequences manipulation or interrogation
A project to sequence the RNA from actual error prone reads from a PCR process and then to analyze the sequenced protein sequence
hierarchical clustering of DNA sequence using upcxx
Approximate pattern matching with Counting Filter on q-grams using SSE instructions (CF2)
G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
BME3160 Bioinformatics Lecture examples in C++ and Perl
This project implements substring search and sequence alignment algorithms for molecular sequences analysis. It includes the Rabin-Karp algorithm for substring search and the Needleman-Wunsch algorithm for sequence alignment. Developed in C++17, the code follows Google Style and includes a Makefile for building and testing the program.
Segmenting DNA sequence into ‘words’,https://arxiv.org/pdf/1202.2518.pdf
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