Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
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Updated
Mar 9, 2023 - Python
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions
COVID-19 Hospital Impact Model for Epidemics
Epidemiology analysis package
CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.
Recognize bio-medical entities from a text corpus
Race and ethnicity Imputation from Disease history with Deep LEarning
Spatiotemporal epidemic model introduced in the context of COVID-19, ACM TSAS, 2022
Simulating epidemics using Python
EpiTator annotates epidemiological information in text documents. It is the natural language processing framework that powers GRITS and EIDR Connect.
Disease propagation ABM generating SIR, severe cases, and R0 over quasi-time.
June is a framework for agent based modelling in an epidemiological and geographical context.
Agent-based simulation model for COVID-19 spread in society and patient outcomes
Covid Epidemics Simulation with Simpy
Python code for "Tracking R of COVID-19 A New Real-Time Estimation Using the Kalman Filter".
missing data handing: visualize and impute
Epidemiological weeks calculation based on the US CDC (MMWR) and ISO week numbering systems
Epidemiological modeling framework for pathogen population genetics and evolution.
A tool for modeling infectious diseases.
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