Tools for computational pathology
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Updated
Apr 10, 2024 - Python
Tools for computational pathology
Official Python implementation of the 'Sparse deconvolution'-v0.3.0
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
Self-Supervised Vision Transformers for multiplexed imaging datasets
Pretraining a foundation model for generalizable fluorescence microscopy-based image restoration
Point Spread Function calculations for fluorescence microscopy
Single-cell fluorescence microscopy data analysis
PyFRAP: A Python based FRAP analysis tool box
GLabViz - Interactive Analysis and Visualization Application for Scientific Data written in Python using Qt and pyqtrgaph
An open-source Python library for the analysis of fluorescence lifetime and hyperspectral images using the phasor approach
Real-time, interactive exploration of 3D image stacks
RNA smFISH oligos/probes design tool
Read Olympus image files (OIF and OIB)
Read Becker & Hickl SDT files
Track Fluorescent Protein in Live Cell images with OpenCV
Laboratory for Fluorescence Dynamics (LFD) file formats
Read PicoQuant PTU and related files
Zebrafish embryo fluorescence quantification
DMLLTDetectorPulseDiscriminator - A supervised machine learning approach for shape-sensitive detector pulse discrimination in lifetime spectroscopy applications
Calcium Imaging Analyzer (CaImAn) consists of a bunch of scripts written in python and put together to speed the analysis of calcium imaging experiments performed with the NIS-Elements Advanced Research software from Nikon.
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