(Legacy project) A modular laboratory experiment management suite, predecessor to qudi-core.
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Updated
Jun 4, 2024 - Python
(Legacy project) A modular laboratory experiment management suite, predecessor to qudi-core.
A Python toolbox for quantitative, reproducible flow cytometry analysis
Everything within the Land model (Soil Plant Atmosphere Module, Land Hydrology, etc)
Self-supervised models for encoding protein localization patterns from microscopy images
ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
An open-source Raspberry-Pi based photobioreactor for cultivating and assessing physiology (photosynthesis & productivity) in microscopic algae.
Precision current source, with optional optical feedback, for driving LEDs and laser diodes
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
An open-source Arduino based chlorophyll fluorometer for quantifying photosynthesis in photosynthetic organisms.
An interactive image processing program for biologists written in Python.
Utilities for pre-processing emission-excitation-matrix (EEM).
File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and image spectroscopy
Modeling and Bayesian analysis of fluorescence and absorbance assays.
GLabViz - Interactive Analysis and Visualization Application for Scientific Data written in Python using Qt and pyqtrgaph
Burst analysis software for smFRET. **Moved to OpenSMFS organization**
Robust and unbiased estimation of the background distribution for fluorescence microscopy.
Global analysis platform for fluorescence data
Iterative H-minima Based Marker-Controlled Watershed for Cell Nucleus Segmentation
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