AMPtk: Amplicon ToolKit for NGS data (formally UFITS)

creating hybrid-gene phylogenetic trees for diversity analyses

Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes

Domingo Fermenter software source code

A spatially explicit trait- and individual-based microbial systems modelling framework

Assembly and phylogentic analysis pipeline for draft genome of a Pestalotiopsis fungi.

Fungal Identification Pipeline

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0

GenBank Record downloader for taxonomists

CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.

Tool to predict eukaryotic signal peptides. In addition, prediction of toxin and fungi signal peptides is also done.

SCGid, a consensus approach to contig filtering and genome prediction from single-cell sequencing libraries

🦠 SporeFlow: ITS and 16S metataxonomics pipeline

Antimicrobial activity prediction for fungal effector candidates

Assemblies, MATA/MATB regions and source data from Peris et al 2022

Script python permettant de télécharger les séquences de la base de donnée JGI.

Programs for fungal taxonomic studies

A small pipeline to analyse marker data into a phylogeny