A Nextflow-based computational pipeline for the structural and sequence analysis of H3N2 Influenza A sequences. This workflow integrates sequence parsing, homology modeling, structural stability evaluation, and protein language model (ESM-2) embeddings to generate structural graphs for downstream machine learning tasks.
Biopython pipeline tracking H3N2 hemagglutinin antigenic drift (2020–2024) — pairwise identity matrix, UPGMA dendrogram, molecular clock estimate.
Analysis pipeline and manuscript materials comparing influenza antigenic distance metrics with phylogenetic tree distances
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