Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

A compressed, associative, exact, and weighted dictionary for k-mers.

Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

sequence element (kmer) enrichment analysis

fast and comprehensive k-mer counting package

K-mer indexing and querying in RNA-Seq data

Reference-free FASTQ filter for rare germline and somatic variants

subset and spaced seed design tool

Assembles a genome and finds true mutations among sequencing errors

Comparison between different methods to simplify sequence data

Telomeric Repeat motif Identification tool with Short-read sequencing

PARMIK is a fast and memory-efficient tool for identifying the "Partial Match" region between two genomic sequences.

A fork of the original https://github.com/medvedevgroup/UST tool.