A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
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Updated
May 13, 2024 - Java
A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
Visualization and Analysis of mass spectrometric and chromatographic data.
SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java
Mass spectrometry data visualization
Tripoli imports raw mass spectrometer data files and supports interactive review and archiving of isotopic data. Tripoli facilitates visualization of temporal trends and scatter during measurement, statistically rigorous filtering of data, and calculation of statistical parameters.
PTM Identification and Quantification Engine from DIA
PepQuery: a targeted peptide search engine
DeltaMass: view and interrogate open proteomics search data
Metabolomics Standards Initiative Ontology
Tools for rapid imaging analysis and visualisation of analytical data (mass spectrometry, optical emission spectroscopy, µXRF, ...)
Java implementation of the latest shorthand nomenclature.
A Java and Python package to Predict Retention Times
Analyze possible peptide fragments with peptide serum stability studies.
LA-iMageS: a software for elemental distribution bioimaging using LA-ICP-MS data
A cloud-based system to support proteomics laboratories in daily quality assessment using a user-friendly interface, easy setup, automated data processing and archiving, and unbiased instrument evaluation.
Web application and REST Api for parsers for the Grammars on succinct lipid nomenclature (Goslin).
High performance io library for proteogenomics
Java API for the extraction and management of MIAPE documents from standard proteomics data files
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