Benchmarking MDAnalysis with dask.

Benchmarking MDAnalysis with Dask (and MPI). Supplementary Information for SciPy 2017 paper.

some simple CLI tools written with MDAnalysis.

Solvent network analysis. Hop is a python package based on MDAnalysis to analyze solvation dynamics.

Compilation of different scripts used for my MD analysis

Python module: Calculation of helices angle during MD

a logistics and persistence engine for the analysis of molecular dynamics trajectories

FreeSASA and MDAnalysis trials

Analysis of molecular dynamics trajectories or conformational ensembles in terms of spin-label distances as probed in double electron-electron resonance (DEER) experiments.

Tutorial for SPIDAL presentation at workshop, showing how to use Midas radical.pilot to analyze an ensemble of MD trajectories with Path Similarity Analysis (as implemented in MDAnalysis).

Cookiecutter repo for MD analysiS -standalone-.

A package for molecular dynamics analysis and parallel tempering in GROMACS

Tactic MMIC translator for MDAnalysis/MMSchema

Command line interface for MDAnalysis

This is code for analyzing the gro/xtc file used in GROMACS, a molecular dynamics simulation program.

About This is code for analyzing the xtc file used in GROMACS, a molecular dynamics simulation program.

Analyze interactions between two fully-charged PAA chains with varying amounts of CaCl2 added

Molecular Dynamics Simulation of Alanine Dipeptide and Dihedral Angle Analysis

A batteries-included toolkit of analysis modules and helper functions for molecular dynamics (MD) simulations.

Fast and accurate aerodynamic modeling using general numerical lifting-line theory.