Graph-based assembly phasing
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Updated
Jun 7, 2024 - Python
Graph-based assembly phasing
LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.
StaG Metagenomic Workflow Collaboration
VirBot: a protein-based RNA virus detector for metagenomic data
MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
Raspir, the rare species identifier
MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG standards
discover-virome: identify and quantify viruses from metagenomic assemblies
Phyrvm: A one-stop software solution for RNA virus mining and host-association prediction
Creates a simple OTU table from Kraken2 report.
Basic work flow and scripts to analyze Viral metagenomics: Trimming, quality checking, contamination removal and annotation
Metagenomic Analysis Pipeline for Food Animals
A flexible metagenomic pipeline combining read-based, assemblies and MAGs with downstream analysis
[a.a. 22/23] A. Aquino, N. Gagliarde
MAPle provides three different modules for the analysis of paired-end short read metagenomic data
The Genome Taxonomy Network for assigning microbial taxonomy to DNA sequences
Annotation Summary for MG-Rast -> Megan6 Annotations
A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG
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