Rapid comparison and dereplication of genomes
-
Updated
Mar 11, 2024 - Python
Rapid comparison and dereplication of genomes
A genome visualization python package for comparative genomics
Build a partitioned pangenome graph from microbial genomes
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Rapid determination of appropriate reference genomes.
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria
creating hybrid-gene phylogenetic trees for diversity analyses
hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes
MGKit: Metagenomics Framework
Python implementation of barrnap (Bacterial ribosomal RNA predictor)
SPIRO is a Smart Plate Imaging Robot
Code to go with the https://doi.org/10.1101/271569 publication. Downloads html pages from culture-collection centers and mines these for growth temperature data.
GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes
Bacterial video tracking & analysis
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
Add a description, image, and links to the microbiology topic page so that developers can more easily learn about it.
To associate your repository with the microbiology topic, visit your repo's landing page and select "manage topics."