Methylation/modified base calling separated from basecalling.
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Updated
Sep 17, 2024 - Python
Methylation/modified base calling separated from basecalling.
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Graph-based assembly phasing
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Nanomotif - a tool for identifying methylated motifs in metagenomic samples
10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/
A toolkit to harmonize and filter structural variations across methods and samples.
Clair3-RNA - a long-read small variant caller for RNA sequencing data
Nanopore long read assembly data pipeline for phage genomes
Anglerfish - Nanopore reads from Illumina libraries
ClairS - a deep-learning method for long-read somatic small variant calling
Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing
Structural variation caller using third generation sequencing
Sturgeon is a CNS neural network classifier
Visualize circular ecDNA reconstructions using Decoil-viz
🔬 Genotyping tool for genome-edited samples, utilizing nanopore sequencer target sequencing
Nanopore direct tRNA sequencing method refinement and RNA modification benchmarking
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