Lightweight bioinformatics pipeline for microbial genome recovery
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Updated
Jun 7, 2024 - Python
Lightweight bioinformatics pipeline for microbial genome recovery
Nanomotif - a tool for identifying methylated motifs in metagenomic samples
🔬 Genotyping tool for genome-edited samples, utilizing nanopore sequencer target sequencing
A PyTorch Basecaller for Oxford Nanopore Reads
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing
Anglerfish - Nanopore reads from Illumina libraries
Graph-based assembly phasing
Research release basecalling models and configurations
Methylation/modified base calling separated from basecalling.
Evaluating Nanopore-based bacterial variant calling
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Quickstart to Bioinformatics & Biomedical AI.
Quality control plotting for long reads
Structural variation caller using third generation sequencing
ClairS - a deep-learning method for long-read somatic small variant calling
modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
Identification of differential RNA modifications from nanopore direct RNA sequencing
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