NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics
-
Updated
Sep 21, 2024 - Python
NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics
This Python script retrieve all children organism under an ancestor in NCBI taxonomy.
Python library to deal with taxonomic IDs and lineages from the NCBI's Taxdump files
With Tkinter GUI. Provides autocomplete suggestions for organism names from a SQLite database, using Levenshtein distance for string matching.
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
Download genomes from NCBI GenBank FTP site
Assign taxonomy with blast, can be used for qiime
Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.
🐣 locally query the ncbi taxonomy
Find the best taxonomic assignement for the given genomic sequence based on maximum F-measure.
muddy_mine - mining pipeline
Compare which reptile species are available in NCBI's Taxonomy Browser to those in the Reptile Database (RDB).
create RDP classifier training files from NCBI taxonomy gbff file
Ribosomal RNA Allele Tree
Add a description, image, and links to the ncbi-taxonomy topic page so that developers can more easily learn about it.
To associate your repository with the ncbi-taxonomy topic, visit your repo's landing page and select "manage topics."