Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
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Updated
Feb 29, 2024 - HTML
Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
A Reproducible Untargeted Metabolomics Data Processing Pipeline
Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.
compare sequences to a shared root reference sequence.
This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.
Nextflow Tutorial - Variant Calling Edition
Nextflow Workshop at Rocky Mountain Genomics HackCon 2018
This repository will soon be archived, to merge contribution with https://github.com/carpentries-incubator/workflows-nextflow
Excel report from bioinformatics analysis of viral seq data with nf-core/viralrecon and other Nextflow workflows
Website for the Workflows Community of Practice at the Wellcome Genome Campus
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