nextflow
Here are 400 public repositories matching this topic...
A flexible pipeline for complete analysis of bacterial genomes
-
Updated
Aug 25, 2024 - Nextflow
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
-
Updated
Sep 3, 2024 - Nextflow
Assembly and binning of metagenomes
-
Updated
Sep 12, 2024 - Nextflow
A single-cell RNAseq pipeline for 10X genomics data
-
Updated
Sep 12, 2024 - Nextflow
ChIP-seq peak-calling, QC and differential analysis pipeline.
-
Updated
Aug 9, 2024 - Nextflow
Amplicon sequencing analysis workflow using DADA2 and QIIME2
-
Updated
Aug 6, 2024 - Nextflow
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
-
Updated
Sep 3, 2024 - Nextflow
RNA-seq analysis pipeline for detection of gene-fusions
-
Updated
Sep 12, 2024 - Nextflow
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
-
Updated
Sep 10, 2024 - Nextflow
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
-
Updated
Jan 27, 2020 - Nextflow
GATK RNA-Seq Variant Calling in Nextflow
-
Updated
Dec 14, 2022 - Nextflow
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
-
Updated
Sep 12, 2024 - Nextflow
Assembly and intrahost/low-frequency variant calling for viral samples
-
Updated
Aug 27, 2024 - Nextflow
Improve this page
Add a description, image, and links to the nextflow topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the nextflow topic, visit your repo's landing page and select "manage topics."