nextflow
Here are 81 public repositories matching this topic...
Configure workflow/pipeline tests using yaml files.
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Aug 4, 2024 - Python
Formalizing and benchmarking open problems in single-cell genomics
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Aug 6, 2024 - Python
A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
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Jan 18, 2023 - Python
Automatic Packaging and Distribution of Bioinformatics Pipelines
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Sep 29, 2017 - Python
Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.
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May 9, 2024 - Python
Nextflow workflow syntax highlighting and snippets for Sublime Text 4
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Nov 27, 2022 - Python
Image Mass Cytometry analysis pipeline
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May 9, 2024 - Python
AMR/VF LGT focused bacterial genomics analysis workflow
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Jul 25, 2024 - Python
The Microbial Co-occurrence Network Explorer
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Oct 17, 2023 - Python
Nextflow pipeline for hyperparameter optimization of machine learning models
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May 13, 2024 - Python
Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.
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May 9, 2024 - Python
A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
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Apr 23, 2024 - Python
Mycobacterial pipeline
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Aug 2, 2024 - Python
GPU deterministic machine learning with Nextflow
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Jun 12, 2022 - Python
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