Análisis genómicos y transcriptómicos con plataforma NGS

Example files for Benin NGS capacity building project

A comprehensive workflow for de novo assembly of whole-genome shotgun sequencing data using Velvet, followed by BLAST searches to analyze assembled contigs.

A genetic sequence analysis on calculating the GC contents and CpG deficiencies on multiple coronaviruses (SAR-CoV, SAR-CoV-2, MERS-CoV and 2 two bat derived SARS-like coronaviruses) to see which coronavirus has the most potentially effective mechanism to escape the anti-virus activities on human bodies.

A Hugo-based deployment of biocomputeobject.org

Quality control and processing of NGS data

A tool for deep statistical analyses and informative visualizations of complex -omic data

🐳 Galaxy Docker repository for NGS Analysis

🧐Handbook for NGS data analysis

Making some comparisons of NGS data

Galaxy YEP Qc & Viz workflow invocation scripts and input datasets

This is Loan Robinson Github Page, which includes all tutorials for education purpose.

Teaching material used in the "Advanced Bioinformatics for Next-Generation Sequencing" class, University of Copenhagen, 2021

Webserver for storage [and analysis] of NGS-based HIVDR testing data

Whole-Genome-Sequencing analysis pipeline of Ascochyta rabiei isolates

Fast-polyvalent trimmer used for several applications of next-generation sequencing

workflow and notes on large virus genome assembly and snp call using FastQC, Trimmomatic, bowtie2, and samtools.

In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.

deepEA: a containerized web server for interactive analysis of epitranscriptome sequencing data