ome-zarr
Here are 14 public repositories matching this topic...
Pure python/C++ micro-manager ecosystem
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Nov 4, 2024 - Python
Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
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Nov 12, 2024 - Python
A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)
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Nov 11, 2024 - Python
Main tasks for the Fractal analytics platform
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Nov 13, 2024 - Python
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
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Aug 26, 2024 - Python
A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
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Nov 3, 2024 - Python
Run encapsulated docker containers with BioFormats2Raw in the Amazon Web Services infrastructure.
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May 16, 2024 - Python
Python code that I used in my blog posts on the Zarr file format.
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Oct 24, 2022 - Python
Fractal tasks for the Opera/Operetta microscope and drug profiling
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Nov 5, 2024 - Python
Large-scale cell segmentation with cellpose.
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Oct 22, 2024 - Python
Converter from the Lif files (Leica Microscope) to OME-Zarr format.
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Oct 30, 2024 - Python
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