A snakemake workflow for the OrthoEvol python package.
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Updated
Jul 16, 2019 - Python
A snakemake workflow for the OrthoEvol python package.
A shell script that uses diamond to compute the reciprocal best hits between two proteomes in a rush.
Algorithm to infer clusters of isoorthologous transcripts using gene-level homology relationships and a Reciprocal Best Hits approach
EDA of virus orthologous groups (VOGs) from VOGDB and eggNOG
A stand-alone tool for evaluating simple statistics of orthologs
a broadly applicable tool for automated gene identification and retrieval
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
Tree-based orthology inference with functionality for reducing contamination
Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.
Trace intervals between genomes using a synteny map
scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms
Use Thor's Axe to cut exons into their evolutionary building blocks ⚡
Feature-aware Directed OrtholoG search
Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
Protein orthologous group assignment with deep learning
A high performance tool to identify orthologs and paralogs across genomes.
Taxon-aware analysis of clustered protein sequences
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