pathpy is an OpenSource python package for the modeling and analysis of pathways and temporal networks using higher-order and multi-order graphical models
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Updated
May 2, 2020 - Python
pathpy is an OpenSource python package for the modeling and analysis of pathways and temporal networks using higher-order and multi-order graphical models
Testing, development environment for a new project of KN BIBS
Proof Of Concept - Open Patient Pathway Generator using and an agent based approach
Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs
A Bio2BEL package for integrating pathway-related information from KEGG in BEL
Modeling heme pathogenicity and pathway dysregulation in the context of hemolytic disorders
PHOsphoproteomic dissecTiOn using Networks
Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024
Converting KGML encoded KEGG pathways to the SIF file format
Converting SBGN encoded pathways to the SIF file format
Converting Signor pathways to GO-CAM
SynPath module for generating type 2 diabetes pathway
Harmonizing pathway databases using Biological Expression Language (BEL)
Integration of pathway-related information from Reactome in BEL
Converting SBGN-encoded pathways to the SIF file format
Python implementation of a bipartite directed multigraph extracted from the Reactome biological pathway database.
Export GO-CAMs to SIF (Python)
Integration of pathway-related information from WikiPathways in BEL
Computational tool for prioritizing the genetic candidates based on the protein functional and regulatory features
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